Helicobacter_D pullorum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_D; s__Helicobacter_D pullorum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pullorum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pullorum
NCBI Strain Identifiers 229336/12;12;229336
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000155495.1)
Genome Characteristics
CheckM Completeness 99.65%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 106
N50 Contigs 76,740 bp
Longest Contig 153,823 bp
Scaffold Count 91
N50 Scaffolds 103,164 bp
Longest Scaffold 208,709 bp
Genome Size 1,814,173 bp
Protein Count 1,830
Coding Density 92.75%
GC Percentage 34.21%
Ambiguous Bases N/A
GTDB representative GCA_000155495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM129804v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02841093
Country Portugal
Date 2015-9-28
Genbank Assembly Accession GCA_001298045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fresh chicken meat
Latitude Longitude 38.764675 N 9.164776 W
Molecule Count 1
CDS Count 1,801
Refseq Category na
Seq Rel Date 2015/09/28
Spanned Gaps 15
Species Taxid 35818
SSU Count 1
Submitter National Institute of Health, Portugal
Taxid 35818
Total Gap Length 351
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JNUR00000000.1