Trabulsiella odontotermitis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Trabulsiella; s__Trabulsiella odontotermitis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Trabulsiella; s__Trabulsiella odontotermitis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Trabulsiella; s__Trabulsiella odontotermitis
NCBI Strain Identifiers TbOT1.3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001297775.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 10
23S Count 7
tRNA Count 19
Contig Count 55
N50 Contigs 299,993 bp
Longest Contig 413,173 bp
Scaffold Count 45
N50 Scaffolds 299,993 bp
Longest Scaffold 413,173 bp
Genome Size 4,618,126 bp
Protein Count 4,236
Coding Density 89.10%
GC Percentage 54.76%
Ambiguous Bases 42
GTDB representative GCA_001297775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM129778v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03943322
Country Mexico:Chihuahua
Date 2015-9-23
Genbank Assembly Accession GCA_001297785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Termite gut
Latitude Longitude None
Molecule Count N/A
CDS Count 4,305
Refseq Category na
Seq Rel Date 2015/09/23
Spanned Gaps 10
Species Taxid 379893
SSU Count 10
Submitter IBT-UNAM
Taxid 379893
Total Gap Length 959
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIFY00000000.1