Trabulsiella odontotermitis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Trabulsiella; s__Trabulsiella odontotermitis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Trabulsiella; s__Trabulsiella odontotermitis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Trabulsiella; s__Trabulsiella odontotermitis
NCBI Strain Identifiers TbOT1.10
GTDB Type Material Designation not type material
GTDB Representative of Species True (5 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 8
23S Count 5
tRNA Count 19
Contig Count 45
N50 Contigs 300,731 bp
Longest Contig 413,915 bp
Scaffold Count 42
N50 Scaffolds 300,731 bp
Longest Scaffold 413,915 bp
Genome Size 4,590,098 bp
Protein Count 4,235
Coding Density 89.25%
GC Percentage 54.74%
Ambiguous Bases 28
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM129777v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03943323
Country Mexico:Chihuahua
Date 2015-9-23
Genbank Assembly Accession GCA_001297775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Termite gut
Latitude Longitude None
Molecule Count N/A
CDS Count 4,294
Refseq Category na
Seq Rel Date 2015/09/23
Spanned Gaps 3
Species Taxid 379893
SSU Count 8
Submitter IBT-UNAM
Taxid 379893
Total Gap Length 242
Translation Table 11
tRNA Count (total) 75
Type Material assembly from proxytype material
Unspanned Gaps 0
Version Status latest
WGS Master LIFX00000000.1