Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers R811
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 96.56%
CheckM Contamination 1.19%
CheckM Strain Heterogeneity 30.0
5S Count 5
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 539
N50 Contigs 49,274 bp
Longest Contig 285,202 bp
Scaffold Count 386
N50 Scaffolds 129,025 bp
Longest Scaffold 346,100 bp
Genome Size 5,444,686 bp
Protein Count 5,548
Coding Density 85.50%
GC Percentage 50.47%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ecoli_assembly01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00031374
Country None
Date 2015-8-21
Genbank Assembly Accession GCA_001297725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source bloody stool
Latitude Longitude None
Molecule Count N/A
CDS Count 6,021
Refseq Category na
Seq Rel Date 2015/08/21
Spanned Gaps 153
Species Taxid 562
SSU Count 7
Submitter ICLAS Monitoring Center, Central Institute for Experimental Animals
Taxid 562
Total Gap Length 17165
Translation Table 11
tRNA Count (total) 99
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBYP00000000.1