Mycoplasmoides pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Mycoplasmatales; f__Mycoplasmoidaceae; g__Mycoplasmoides; s__Mycoplasmoides pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Tenericutes; c__Mollicutes; o__Mycoplasmatales; f__Mycoplasmataceae; g__Mycoplasma; s__Mycoplasma pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Tenericutes; c__Mollicutes; o__Mycoplasmatales; f__Mycoplasmataceae; g__Mycoplasma; s__Mycoplasma pneumoniae
NCBI Strain Identifiers Mympn_5392
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001272835.1)
Genome Characteristics
CheckM Completeness 98.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 21
N50 Contigs 159,704 bp
Longest Contig 319,047 bp
Scaffold Count 12
N50 Scaffolds 246,205 bp
Longest Scaffold 388,038 bp
Genome Size 821,813 bp
Protein Count 780
Coding Density 90.52%
GC Percentage 40.08%
Ambiguous Bases 55
GTDB representative GCA_001272835.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM129666v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03897311
Country Germany
Date 2015-9-22
Genbank Assembly Accession GCA_001296665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Respiratory tract
Latitude Longitude 51.52 N 9.91 E
Molecule Count N/A
CDS Count 761
Refseq Category na
Seq Rel Date 2015/09/22
Spanned Gaps 9
Species Taxid 2104
SSU Count 1
Submitter Centre for genomic regulation (CRG)
Taxid 2104
Total Gap Length 689
Translation Table 4
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LHQA00000000.1