Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium
NCBI Strain Identifiers ST4024
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 63
N50 Contigs 223,519 bp
Longest Contig 736,535 bp
Scaffold Count 63
N50 Scaffolds 223,519 bp
Longest Scaffold 736,535 bp
Genome Size 5,083,489 bp
Protein Count 4,820
Coding Density 87.66%
GC Percentage 51.86%
Ambiguous Bases 1
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM129538v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03120582
Country Hong Kong
Date 2015-9-22
Genbank Assembly Accession GCA_001295385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude 22.16 N 114.9 E
Molecule Count N/A
CDS Count 5,119
Refseq Category na
Seq Rel Date 2015/09/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter The Chinese University of Hong Kong
Taxid 90371
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRYU00000000.1