Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis; sb__Yersinia pestis subsp. microtus; x__Yersinia pestis subsp. microtus bv. Altaica
NCBI Strain Identifiers SCPM-O-B-7812
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.52%
CheckM Contamination 0.13%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 223
N50 Contigs 42,933 bp
Longest Contig 105,059 bp
Scaffold Count 223
N50 Scaffolds 42,933 bp
Longest Scaffold 105,059 bp
Genome Size 4,575,487 bp
Protein Count 4,271
Coding Density 83.74%
GC Percentage 47.54%
Ambiguous Bases N/A
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM129496v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03839881
Country None
Date 2015-09-21
Genbank Assembly Accession GCA_001294965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 3
CDS Count 4,291
Refseq Category na
Seq Rel Date 2015/09/21
Spanned Gaps 0
Species Taxid 632
SSU Count 1
Submitter SRCAMB
Taxid 385967
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIYV00000000.1