Idiomarina abyssalis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Alteromonadaceae; g__Idiomarina; s__Idiomarina abyssalis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Idiomarinaceae; g__Idiomarina; s__Idiomarina abyssalis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Idiomarinaceae; g__Idiomarina; s__Idiomarina abyssalis
NCBI Strain Identifiers KMM 227
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_900116625.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 68
N50 Contigs 170,438 bp
Longest Contig 983,913 bp
Scaffold Count 68
N50 Scaffolds 170,438 bp
Longest Scaffold 983,913 bp
Genome Size 2,684,812 bp
Protein Count 2,579
Coding Density 93.38%
GC Percentage 47.18%
Ambiguous Bases N/A
GTDB representative GCA_900116625.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name IdioAbyss1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03801268
Country Pacific Ocean: North-Western
Date 2015-9-18
Genbank Assembly Accession GCA_001294685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source deep water
Latitude Longitude 8.20 N 133.0 W
Molecule Count N/A
CDS Count 2,558
Refseq Category na
Seq Rel Date 2015/09/18
Spanned Gaps 0
Species Taxid 86102
SSU Count 1
Submitter University of New Hampshire at Manchester
Taxid 86102
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LGOW00000000.1