Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas savastanoi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas savastanoi; x__Pseudomonas savastanoi pv. glycinea
NCBI Strain Identifiers UnB647
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 364
N50 Contigs 38,548 bp
Longest Contig 139,102 bp
Scaffold Count 144
N50 Scaffolds 139,102 bp
Longest Scaffold 333,180 bp
Genome Size 6,047,953 bp
Protein Count 5,553
Coding Density 85.48%
GC Percentage 57.94%
Ambiguous Bases 144
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PgyUnB647
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03837734
Country None
Date 2015-9-18
Genbank Assembly Accession GCA_001294275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,524
Refseq Category na
Seq Rel Date 2015/09/18
Spanned Gaps 220
Species Taxid 29438
SSU Count 1
Submitter University of Toronto
Taxid 318
Total Gap Length 152244
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGLL00000000.1