Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas syringae group genomosp. 3; x__Pseudomonas syringae pv. maculicola
NCBI Strain Identifiers KN91
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.22%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 17
Contig Count 369
N50 Contigs 36,610 bp
Longest Contig 166,339 bp
Scaffold Count 55
N50 Scaffolds 454,921 bp
Longest Scaffold 671,464 bp
Genome Size 5,942,801 bp
Protein Count 5,351
Coding Density 84.94%
GC Percentage 58.06%
Ambiguous Bases 188
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PmaKN91
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03837763
Country None
Date 2015-9-18
Genbank Assembly Accession GCA_001294185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,328
Refseq Category na
Seq Rel Date 2015/09/18
Spanned Gaps 314
Species Taxid 251701
SSU Count 1
Submitter University of Toronto
Taxid 59511
Total Gap Length 202873
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGLF00000000.1