Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas amygdali
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas amygdali; x__Pseudomonas amygdali pv. lachrymans
NCBI Strain Identifiers YM7902
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 1.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 194
N50 Contigs 116,280 bp
Longest Contig 435,498 bp
Scaffold Count 95
N50 Scaffolds 235,371 bp
Longest Scaffold 906,924 bp
Genome Size 6,469,762 bp
Protein Count 6,123
Coding Density 87.44%
GC Percentage 57.77%
Ambiguous Bases 206
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PlaYM7902
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03837737
Country None
Date 2015-9-18
Genbank Assembly Accession GCA_001293845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,193
Refseq Category na
Seq Rel Date 2015/09/18
Spanned Gaps 99
Species Taxid 47877
SSU Count 1
Submitter University of Toronto
Taxid 53707
Total Gap Length 44728
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGLI00000000.1