Pseudoalteromonas ruthenica
Isolate HQ 5S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Alteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas ruthenica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Pseudoalteromonadaceae; g__Pseudoalteromonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Pseudoalteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas sp. SW0106-04
NCBI Strain Identifiers SW0106-04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000336495.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.3%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 0
23S Count 1
tRNA Count 19
Contig Count 30
N50 Contigs 219,576 bp
Longest Contig 620,074 bp
Scaffold Count 30
N50 Scaffolds 219,576 bp
Longest Scaffold 620,074 bp
Genome Size 4,052,294 bp
Protein Count 3,699
Coding Density 90.69%
GC Percentage 47.34%
Ambiguous Bases N/A
GTDB representative GCA_000336495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM129380v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00039894
Country Indian Ocean
Date 2015-9-1
Genbank Assembly Accession GCA_001293805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seawater
Latitude Longitude 36.93 S 51.3 E
Molecule Count N/A
CDS Count 3,669
Refseq Category na
Seq Rel Date 2015/09/01
Spanned Gaps 0
Species Taxid 1702169
SSU Count 1
Submitter Shandong University
Taxid 1702169
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BCAI00000000.1