Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium
NCBI Strain Identifiers 33676
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 4
N50 Contigs 4,809,574 bp
Longest Contig 4,809,574 bp
Scaffold Count 4
N50 Scaffolds 4,809,574 bp
Longest Scaffold 4,809,574 bp
Genome Size 5,088,186 bp
Protein Count 4,840
Coding Density 87.00%
GC Percentage 52.13%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM129350v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03795193
Country Mexico: Mexico City
Date 2015-9-17
Genbank Assembly Accession GCA_001293505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood-culture
Latitude Longitude 19.43 N 99.13 W
Molecule Count 4
CDS Count 5,143
Refseq Category na
Seq Rel Date 2015/09/17
Spanned Gaps 0
Species Taxid 28901
SSU Count 7
Submitter Instituto de Biotecnologia, UNAM
Taxid 90371
Total Gap Length 0
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None