Streptococcus suis
Isolate LQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus suis
NCBI Strain Identifiers SRD478
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000294495.1)
Genome Characteristics
CheckM Completeness 85.15%
CheckM Contamination 10.01%
CheckM Strain Heterogeneity 97.3
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 260
N50 Contigs 9,865 bp
Longest Contig 38,649 bp
Scaffold Count 260
N50 Scaffolds 9,865 bp
Longest Scaffold 38,649 bp
Genome Size 1,710,452 bp
Protein Count 1,807
Coding Density 87.57%
GC Percentage 41.83%
Ambiguous Bases 68
GTDB representative GCA_000294495.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 478NasalB_v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03485883
Country USA: Iowa
Date 2015-9-17
Genbank Assembly Accession GCA_001293375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasal cavity
Latitude Longitude None
Molecule Count N/A
CDS Count 1,832
Refseq Category na
Seq Rel Date 2015/09/17
Spanned Gaps 0
Species Taxid 1307
SSU Count 2
Submitter USDA-ARS
Taxid 1307
Total Gap Length 0
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGKK00000000.1