Photobacterium leiognathi_A
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium leiognathi; sb__Photobacterium leiognathi subsp. mandapamensis
NCBI Strain Identifiers KNH6
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.4%
CheckM Contamination 0.59%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 2
23S Count 4
tRNA Count 17
Contig Count 34
N50 Contigs 636,609 bp
Longest Contig 951,483 bp
Scaffold Count 34
N50 Scaffolds 636,609 bp
Longest Scaffold 951,483 bp
Genome Size 4,552,777 bp
Protein Count 4,022
Coding Density 85.88%
GC Percentage 41.21%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM129318v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03421179
Country USA: HI; Oahu; Kaneohe Bay
Date 2015-9-17
Genbank Assembly Accession GCA_001293185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source bay surface water
Latitude Longitude None
Molecule Count N/A
CDS Count 3,982
Refseq Category na
Seq Rel Date 2015/09/17
Spanned Gaps 0
Species Taxid 553611
SSU Count 8
Submitter University of Oklahoma
Taxid 48408
Total Gap Length 0
Translation Table 11
tRNA Count (total) 111
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LAFZ00000000.1