Pseudomonas_E hunanensis
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E hunanensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas putida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas putida group; s__Pseudomonas putida
NCBI Strain Identifiers IOFA1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003671955.1)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 1.95%
CheckM Strain Heterogeneity 5.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 18
Contig Count 188
N50 Contigs 96,425 bp
Longest Contig 224,354 bp
Scaffold Count 188
N50 Scaffolds 96,425 bp
Longest Scaffold 224,354 bp
Genome Size 5,708,798 bp
Protein Count 5,289
Coding Density 88.34%
GC Percentage 61.36%
Ambiguous Bases N/A
GTDB representative GCA_003671955.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM129302v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03852107
Country Indian Ocean
Date 2015-9-17
Genbank Assembly Accession GCA_001293025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source deep-sea sediments
Latitude Longitude None
Molecule Count N/A
CDS Count 5,350
Refseq Category na
Seq Rel Date 2015/09/17
Spanned Gaps 0
Species Taxid 303
SSU Count 2
Submitter 85303
Taxid 303
Total Gap Length 0
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGRH00000000.1