Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers Campylobacter;RC038
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 98.87%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 66.67
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 216
N50 Contigs 17,801 bp
Longest Contig 47,980 bp
Scaffold Count 169
N50 Scaffolds 25,440 bp
Longest Scaffold 72,371 bp
Genome Size 1,810,582 bp
Protein Count 1,980
Coding Density 93.10%
GC Percentage 31.06%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name RC038_S8contigs.fa
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3487044
Country United Kingdom:Northern Ireland
Date 2015-9-11
Genbank Assembly Accession GCA_001292305.1
Genome Category Isolate
Genome Representation full
Isolate Campylobacter
Isolation Source Supermarket
Latitude Longitude 54.35 N 5.55 W
Molecule Count N/A
CDS Count 1,900
Refseq Category na
Seq Rel Date 2015/09/11
Spanned Gaps 47
Species Taxid 195
SSU Count 1
Submitter LSHTM
Taxid 195
Total Gap Length 499
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYQE00000000.1