Campylobacter_D jejuni
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D jejuni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter jejuni
NCBI Strain Identifiers RC429;Campylobacter
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457695.1)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.72%
CheckM Strain Heterogeneity 37.5
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 158
N50 Contigs 22,906 bp
Longest Contig 87,088 bp
Scaffold Count 140
N50 Scaffolds 28,378 bp
Longest Scaffold 106,676 bp
Genome Size 1,624,399 bp
Protein Count 1,731
Coding Density 94.44%
GC Percentage 30.49%
Ambiguous Bases N/A
GTDB representative GCA_001457695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name RC429_S46contigs.fa
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3487082
Country United Kingdom:Northern Ireland
Date 2015-9-11
Genbank Assembly Accession GCA_001291925.1
Genome Category Isolate
Genome Representation full
Isolate Campylobacter
Isolation Source Supermarket
Latitude Longitude 54.35 N 5.55 W
Molecule Count N/A
CDS Count 1,718
Refseq Category na
Seq Rel Date 2015/09/11
Spanned Gaps 18
Species Taxid 197
SSU Count 1
Submitter LSHTM
Taxid 197
Total Gap Length 180
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYRQ00000000.1