Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers RC285;Campylobacter
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.29%
CheckM Contamination 1.61%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 220
N50 Contigs 16,565 bp
Longest Contig 76,193 bp
Scaffold Count 178
N50 Scaffolds 21,482 bp
Longest Scaffold 76,193 bp
Genome Size 1,794,780 bp
Protein Count 1,963
Coding Density 93.29%
GC Percentage 31.04%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name RC285_S34contigs.fa
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3487070
Country United Kingdom:Northern Ireland
Date 2015-9-11
Genbank Assembly Accession GCA_001291745.1
Genome Category Isolate
Genome Representation full
Isolate Campylobacter
Isolation Source Supermarket
Latitude Longitude 54.35 N 5.55 W
Molecule Count N/A
CDS Count 1,885
Refseq Category na
Seq Rel Date 2015/09/11
Spanned Gaps 42
Species Taxid 195
SSU Count 1
Submitter LSHTM
Taxid 195
Total Gap Length 469
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYRE00000000.1