Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis variant bovis; x__Mycobacterium tuberculosis variant bovis BCG
NCBI Strain Identifiers Prague
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.78%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 9
N50 Contigs 918,853 bp
Longest Contig 1,412,898 bp
Scaffold Count 1
N50 Scaffolds 4,297,448 bp
Longest Scaffold 4,297,448 bp
Genome Size 4,297,448 bp
Protein Count 3,984
Coding Density 90.22%
GC Percentage 65.58%
Ambiguous Bases 21
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name bcg_Prague
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3257673
Country None
Date 2015-09-03
Genbank Assembly Accession GCA_001287225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,170
Refseq Category na
Seq Rel Date 2015/09/03
Spanned Gaps 8
Species Taxid 1773
SSU Count 1
Submitter KAUST
Taxid 33892
Total Gap Length 1953
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CUWM00000000.1