Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 700495
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.85%
CheckM Strain Heterogeneity 27.27
5S Count 5
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 340
N50 Contigs 64,231 bp
Longest Contig 250,346 bp
Scaffold Count 340
N50 Scaffolds 64,231 bp
Longest Scaffold 250,346 bp
Genome Size 5,453,949 bp
Protein Count 5,520
Coding Density 87.67%
GC Percentage 50.40%
Ambiguous Bases 20
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 7748_7#44
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1466174
Country Pakistan
Date 2015-8-23
Genbank Assembly Accession GCA_001286165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,965
Refseq Category na
Seq Rel Date 2015/08/23
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter SC
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 91
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYBA00000000.1