Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers R302583-2A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 200
N50 Contigs 132,809 bp
Longest Contig 279,655 bp
Scaffold Count 200
N50 Scaffolds 132,809 bp
Longest Scaffold 279,655 bp
Genome Size 5,300,706 bp
Protein Count 5,272
Coding Density 87.50%
GC Percentage 50.49%
Ambiguous Bases 20
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 8205_8#84
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1527985
Country Mozambique
Date 2015-08-24
Genbank Assembly Accession GCA_001285485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,737
Refseq Category na
Seq Rel Date 2015/08/24
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter SC
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYGF00000000.1