Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers R402077
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 262
N50 Contigs 72,304 bp
Longest Contig 217,355 bp
Scaffold Count 262
N50 Scaffolds 72,304 bp
Longest Scaffold 217,355 bp
Genome Size 5,091,798 bp
Protein Count 4,991
Coding Density 86.93%
GC Percentage 50.50%
Ambiguous Bases 12
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 8205_8#72
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1528004
Country Kenya
Date 2015-08-24
Genbank Assembly Accession GCA_001284365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,476
Refseq Category na
Seq Rel Date 2015/08/24
Spanned Gaps 0
Species Taxid 562
SSU Count 3
Submitter SC
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 88
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYFY00000000.1