Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 501016
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 273
N50 Contigs 55,735 bp
Longest Contig 194,422 bp
Scaffold Count 272
N50 Scaffolds 56,232 bp
Longest Scaffold 194,422 bp
Genome Size 4,916,558 bp
Protein Count 4,817
Coding Density 87.24%
GC Percentage 50.76%
Ambiguous Bases 6
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8205_3#48
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1531025
Country India
Date 2015-8-24
Genbank Assembly Accession GCA_001283305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,310
Refseq Category na
Seq Rel Date 2015/08/24
Spanned Gaps 1
Species Taxid 562
SSU Count 2
Submitter SC
Taxid 562
Total Gap Length 39
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYEW00000000.1