Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers EPEC 393
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.39%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 194
N50 Contigs 105,464 bp
Longest Contig 395,512 bp
Scaffold Count 193
N50 Scaffolds 105,464 bp
Longest Scaffold 395,512 bp
Genome Size 5,278,770 bp
Protein Count 5,107
Coding Density 87.79%
GC Percentage 50.30%
Ambiguous Bases 44
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM128199v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03785605
Country Netherlands
Date 2015-9-15
Genbank Assembly Accession GCA_001281995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 51.9 N 4.50 E
Molecule Count N/A
CDS Count 5,550
Refseq Category na
Seq Rel Date 2015/09/15
Spanned Gaps 1
Species Taxid 562
SSU Count 1
Submitter University of Groningen, University Medical Center Groningen
Taxid 562
Total Gap Length 21
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGBM00000000.1