Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers STEC 2075
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 193
N50 Contigs 146,336 bp
Longest Contig 443,049 bp
Scaffold Count 183
N50 Scaffolds 146,336 bp
Longest Scaffold 443,049 bp
Genome Size 5,282,075 bp
Protein Count 5,132
Coding Density 87.49%
GC Percentage 50.23%
Ambiguous Bases 21
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM128184v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03785596
Country Netherlands
Date 2015-9-15
Genbank Assembly Accession GCA_001281845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 51.9 N 4.50 E
Molecule Count N/A
CDS Count 5,606
Refseq Category na
Seq Rel Date 2015/09/15
Spanned Gaps 10
Species Taxid 562
SSU Count 1
Submitter University of Groningen, University Medical Center Groningen
Taxid 562
Total Gap Length 628
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGBD00000000.1