Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers S372-5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 20.0
5S Count 8
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 81
N50 Contigs 480,510 bp
Longest Contig 658,515 bp
Scaffold Count 81
N50 Scaffolds 480,510 bp
Longest Scaffold 658,515 bp
Genome Size 5,147,783 bp
Protein Count 4,693
Coding Density 86.58%
GC Percentage 45.12%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM128065v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03799840
Country Canada
Date 2015-9-9
Genbank Assembly Accession GCA_001280655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Oyster
Latitude Longitude None
Molecule Count 1
CDS Count 4,872
Refseq Category na
Seq Rel Date 2015/09/09
Spanned Gaps 0
Species Taxid 670
SSU Count 12
Submitter Health Canada
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 126
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIRQ00000000.1