Halorubrum tropicale
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Halobacteria; o__Halobacteriales; f__Haloferacaceae; g__Halorubrum; s__Halorubrum tropicale
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Halobacteria; o__Haloferacales; f__Halorubraceae; g__Halorubrum; s__Halorubrum tropicale
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Halobacteria; o__Haloferacales; f__Halorubraceae; g__Halorubrum; s__Halorubrum tropicale
NCBI Strain Identifiers 5
GTDB Type Material Designation not type material
GTDB Representative of Species True (7 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 17
N50 Contigs 515,815 bp
Longest Contig 1,031,026 bp
Scaffold Count 17
N50 Scaffolds 515,815 bp
Longest Scaffold 1,031,026 bp
Genome Size 3,567,018 bp
Protein Count 3,595
Coding Density 85.75%
GC Percentage 67.65%
Ambiguous Bases 67
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM128045v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04009067
Country Puerto Rico: Cabo Rojo
Date 2015-9-9
Genbank Assembly Accession GCA_001280455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hypersaline pond
Latitude Longitude None
Molecule Count N/A
CDS Count 3,505
Refseq Category representative genome
Seq Rel Date 2015/09/09
Spanned Gaps 0
Species Taxid 1765655
SSU Count 1
Submitter UPR- Mayaguez
Taxid 1765655
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIST00000000.1