Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers SF-166
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.39%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 2
N50 Contigs 4,910,962 bp
Longest Contig 4,910,962 bp
Scaffold Count 2
N50 Scaffolds 4,910,962 bp
Longest Scaffold 4,910,962 bp
Genome Size 5,025,183 bp
Protein Count 4,660
Coding Density 87.66%
GC Percentage 50.62%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM128038v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04026226
Country USA: San Francisco
Date 2015-9-9
Genbank Assembly Accession GCA_001280385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient blood
Latitude Longitude 37.755651 N 122.404572 W
Molecule Count 2
CDS Count 5,061
Refseq Category na
Seq Rel Date 2015/09/09
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter Santa Clara University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 90
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None