Clavibacter capsici
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Clavibacter; s__Clavibacter capsici
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Clavibacter; s__Clavibacter michiganensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Clavibacter; s__Clavibacter michiganensis; sb__Clavibacter michiganensis subsp. capsici
NCBI Strain Identifiers PF008
GTDB Type Material Designation type strain of subspecies
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.99%
CheckM Contamination 0.51%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 3
N50 Contigs 3,056,296 bp
Longest Contig 3,056,296 bp
Scaffold Count 3
N50 Scaffolds 3,056,296 bp
Longest Scaffold 3,056,296 bp
Genome Size 3,241,713 bp
Protein Count 3,074
Coding Density 89.94%
GC Percentage 73.18%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM128020v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03896004
Country South Korea
Date 2015-09-08
Genbank Assembly Accession GCA_001280205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source plant stem
Latitude Longitude 37 N 126.5 E
Molecule Count 3
CDS Count 3,043
Refseq Category na
Seq Rel Date 2015/09/08
Spanned Gaps 0
Species Taxid 28447
SSU Count 2
Submitter Kyung Hee University
Taxid 1874630
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None