Lysinibacillus contaminans
Isolate MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Planococcaceae; g__Lysinibacillus; s__Lysinibacillus contaminans
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Lysinibacillus; s__Lysinibacillus contaminans
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Lysinibacillus; s__Lysinibacillus contaminans
NCBI Strain Identifiers DSM 25560
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 73.68%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 13
N50 Contigs 2,598,722 bp
Longest Contig 2,598,722 bp
Scaffold Count 9
N50 Scaffolds 2,598,722 bp
Longest Scaffold 2,598,722 bp
Genome Size 4,100,313 bp
Protein Count 3,872
Coding Density 81.72%
GC Percentage 37.37%
Ambiguous Bases 8
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM127894v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03835250
Country South Korea
Date 2015-9-4
Genbank Assembly Accession GCA_001278945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source surface water
Latitude Longitude None
Molecule Count N/A
CDS Count 3,842
Refseq Category na
Seq Rel Date 2015/09/04
Spanned Gaps 4
Species Taxid 1293441
SSU Count 1
Submitter Fujian Academy of Agricultural Sciences
Taxid 1293441
Total Gap Length 11592
Translation Table 11
tRNA Count (total) 74
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LGRV00000000.1