Bifidobacterium vaginale
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium vaginale
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Gardnerella; s__Gardnerella vaginalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Gardnerella; s__Gardnerella vaginalis
NCBI Strain Identifiers 14019_MetR
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001042655.1)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 7
N50 Contigs 473,695 bp
Longest Contig 616,496 bp
Scaffold Count 7
N50 Scaffolds 473,695 bp
Longest Scaffold 616,496 bp
Genome Size 1,661,101 bp
Protein Count 1,288
Coding Density 87.24%
GC Percentage 41.33%
Ambiguous Bases N/A
GTDB representative GCA_001042655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM127834v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04014465
Country USA: Hamilton; NJ
Date 2015-9-2
Genbank Assembly Accession GCA_001278345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source laboratory-derived
Latitude Longitude None
Molecule Count N/A
CDS Count 1,369
Refseq Category na
Seq Rel Date 2015/09/02
Spanned Gaps 0
Species Taxid 2702
SSU Count 1
Submitter Medical Diagnostic Laboratories
Taxid 2702
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIYA00000000.1