Flavobacterium akiainvivens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium akiainvivens
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium akiainvivens
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium akiainvivens
NCBI Strain Identifiers IK-1
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.65%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 3
23S Count 4
tRNA Count 20
Contig Count 17
N50 Contigs 512,188 bp
Longest Contig 850,256 bp
Scaffold Count 5
N50 Scaffolds 4,521,259 bp
Longest Scaffold 4,521,259 bp
Genome Size 4,533,022 bp
Protein Count 4,072
Coding Density 89.84%
GC Percentage 43.81%
Ambiguous Bases 10
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM127811v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04015015
Country USA: Hawaii
Date 2015-9-2
Genbank Assembly Accession GCA_001278115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source decaying wood
Latitude Longitude 21.35 N 157.80 W
Molecule Count N/A
CDS Count 4,021
Refseq Category representative genome
Seq Rel Date 2015/09/02
Spanned Gaps 12
Species Taxid 1202724
SSU Count 2
Submitter University of Hawaii at Manoa
Taxid 1202724
Total Gap Length 2254
Translation Table 11
tRNA Count (total) 48
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LIYD00000000.1