Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 100554_aEPEC
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 158
N50 Contigs 153,195 bp
Longest Contig 399,167 bp
Scaffold Count 158
N50 Scaffolds 153,195 bp
Longest Scaffold 399,167 bp
Genome Size 5,509,046 bp
Protein Count 5,373
Coding Density 87.69%
GC Percentage 50.43%
Ambiguous Bases 3
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 7748_7#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1466122
Country Gambia
Date 2015-08-23
Genbank Assembly Accession GCA_001277435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,856
Refseq Category na
Seq Rel Date 2015/08/23
Spanned Gaps 0
Species Taxid 562
SSU Count 3
Submitter SC
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CYAE00000000.1