Lactiplantibacillus plantarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus plantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum; sb__Lactobacillus plantarum subsp. plantarum
NCBI Strain Identifiers CGMCC 1.557
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615325.1)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 2.93%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 3
N50 Contigs 3,156,839 bp
Longest Contig 3,156,839 bp
Scaffold Count 3
N50 Scaffolds 3,156,839 bp
Longest Scaffold 3,156,839 bp
Genome Size 3,273,239 bp
Protein Count 3,107
Coding Density 83.72%
GC Percentage 44.44%
Ambiguous Bases N/A
GTDB representative GCA_000615325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM127231v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976562
Country China
Date 2017-7-5
Genbank Assembly Accession GCA_001272315.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cell culture
Latitude Longitude 43 N 125 E
Molecule Count 3
CDS Count 3,131
Refseq Category na
Seq Rel Date 2017/07/05
Spanned Gaps 0
Species Taxid 1590
SSU Count 5
Submitter Acadamy of Military Medical Sciences
Taxid 337330
Total Gap Length 0
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None