Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers S487-4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 2
23S Count 7
tRNA Count 20
Contig Count 102
N50 Contigs 431,578 bp
Longest Contig 867,905 bp
Scaffold Count 102
N50 Scaffolds 431,578 bp
Longest Scaffold 867,905 bp
Genome Size 5,181,575 bp
Protein Count 4,771
Coding Density 86.65%
GC Percentage 45.23%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM127021v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03799853
Country Canada
Date 2015-8-18
Genbank Assembly Accession GCA_001270215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Oyster
Latitude Longitude None
Molecule Count N/A
CDS Count 4,957
Refseq Category na
Seq Rel Date 2015/08/18
Spanned Gaps 0
Species Taxid 670
SSU Count 8
Submitter Health Canada
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 128
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFZE00000000.1