Escherichia flexneri
Isolate LQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers chicken fecal
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 94.31%
CheckM Contamination 12.21%
CheckM Strain Heterogeneity 99.42
5S Count 2
16S Count 2
23S Count 2
tRNA Count 18
Contig Count 66
N50 Contigs 171,935 bp
Longest Contig 409,959 bp
Scaffold Count 66
N50 Scaffolds 171,935 bp
Longest Scaffold 409,959 bp
Genome Size 4,942,580 bp
Protein Count 4,574
Coding Density 88.30%
GC Percentage 50.79%
Ambiguous Bases 194
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 1.ECB31.1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3498436
Country None
Date 2015-8-7
Genbank Assembly Accession GCA_001268985.1
Genome Category Isolate
Genome Representation full
Isolate chicken fecal
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,948
Refseq Category na
Seq Rel Date 2015/08/07
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter Laboratory of Evolutionary Bioinformatics, SNU
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXXW00000000.1