Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers chicken fecal
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 27.27
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 318
N50 Contigs 33,670 bp
Longest Contig 123,426 bp
Scaffold Count 318
N50 Scaffolds 33,670 bp
Longest Scaffold 123,426 bp
Genome Size 4,989,112 bp
Protein Count 4,877
Coding Density 88.03%
GC Percentage 50.61%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 1.ECD03.1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3498439
Country None
Date 2015-08-07
Genbank Assembly Accession GCA_001268965.1
Genome Category Isolate
Genome Representation full
Isolate chicken fecal
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,302
Refseq Category na
Seq Rel Date 2015/08/07
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter Laboratory of Evolutionary Bioinformatics, SNU
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CXYD00000000.1