Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus
NCBI Strain Identifiers RM-13-3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.66%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 58
N50 Contigs 427,514 bp
Longest Contig 918,818 bp
Scaffold Count 58
N50 Scaffolds 427,514 bp
Longest Scaffold 918,818 bp
Genome Size 5,233,576 bp
Protein Count 4,758
Coding Density 87.14%
GC Percentage 45.27%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM126796v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03795180
Country Canada
Date 2015-8-17
Genbank Assembly Accession GCA_001267965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Mollusk
Latitude Longitude None
Molecule Count 1
CDS Count 4,918
Refseq Category na
Seq Rel Date 2015/08/17
Spanned Gaps 0
Species Taxid 670
SSU Count 9
Submitter Health Canada
Taxid 670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 130
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFWO00000000.1