Vibrio alginolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio alginolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio alginolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio alginolyticus
NCBI Strain Identifiers RM-10-2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000354175.2)
Genome Characteristics
CheckM Completeness 99.73%
CheckM Contamination 0.13%
CheckM Strain Heterogeneity 20.0
5S Count 11
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 84
N50 Contigs 426,720 bp
Longest Contig 1,412,407 bp
Scaffold Count 84
N50 Scaffolds 426,720 bp
Longest Scaffold 1,412,407 bp
Genome Size 5,284,103 bp
Protein Count 4,727
Coding Density 86.87%
GC Percentage 44.58%
Ambiguous Bases N/A
GTDB representative GCA_000354175.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM126761v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03795179
Country Canada
Date 2015-8-14
Genbank Assembly Accession GCA_001267615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Mollusc
Latitude Longitude None
Molecule Count N/A
CDS Count 4,778
Refseq Category na
Seq Rel Date 2015/08/14
Spanned Gaps 0
Species Taxid 663
SSU Count 15
Submitter Health Canada
Taxid 663
Total Gap Length 0
Translation Table 11
tRNA Count (total) 117
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFWH00000000.1