Oblitimonas alkaliphila
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Oblitimonas; s__Oblitimonas alkaliphila
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Oblitimonas; s__Oblitimonas alkaliphila
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Oblitimonas; s__Oblitimonas alkaliphila
NCBI Strain Identifiers E1148
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001267175.1)
Genome Characteristics
CheckM Completeness 93.71%
CheckM Contamination 2.04%
CheckM Strain Heterogeneity 75.0
5S Count 6
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 1
N50 Contigs 2,377,259 bp
Longest Contig 2,377,259 bp
Scaffold Count 1
N50 Scaffolds 2,377,259 bp
Longest Scaffold 2,377,259 bp
Genome Size 2,377,259 bp
Protein Count 2,235
Coding Density 89.36%
GC Percentage 47.45%
Ambiguous Bases N/A
GTDB representative GCA_001267175.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM126729v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03948285
Country USA: Missouri
Date 2015-8-13
Genbank Assembly Accession GCA_001267295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count 1
CDS Count 2,218
Refseq Category na
Seq Rel Date 2015/08/13
Spanned Gaps 0
Species Taxid 1697053
SSU Count 5
Submitter CDC
Taxid 1697053
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None