Clostridium_H botulinum_B
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_H; s__Clostridium_H botulinum_B
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium botulinum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium botulinum
NCBI Strain Identifiers 58752-CD
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000204565.1)
Genome Characteristics
CheckM Completeness 99.31%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 114
N50 Contigs 41,221 bp
Longest Contig 126,945 bp
Scaffold Count 114
N50 Scaffolds 41,221 bp
Longest Scaffold 126,945 bp
Genome Size 2,825,871 bp
Protein Count 2,663
Coding Density 87.31%
GC Percentage 28.02%
Ambiguous Bases 2
GTDB representative GCA_000204565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM126704v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03876603
Country France: Vendee
Date 2015-8-12
Genbank Assembly Accession GCA_001267045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Poultry Farm
Latitude Longitude 46.39 N 1.26 W
Molecule Count 1
CDS Count 2,618
Refseq Category na
Seq Rel Date 2015/08/12
Spanned Gaps 0
Species Taxid 1491
SSU Count 5
Submitter Anses
Taxid 1491
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LHYT00000000.1