Escherichia flexneri
Isolate MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 103338
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 89.55%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 112
N50 Contigs 115,157 bp
Longest Contig 396,664 bp
Scaffold Count 112
N50 Scaffolds 115,157 bp
Longest Scaffold 396,664 bp
Genome Size 4,655,808 bp
Protein Count 4,529
Coding Density 87.43%
GC Percentage 50.54%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 103338
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02640740
Country Gambia
Date 2015-08-11
Genbank Assembly Accession GCA_001266125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 13.47 N 16.60 W
Molecule Count N/A
CDS Count 4,963
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter University of Maryland, School of Medicine
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHSU00000000.1