Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 100175
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 94.14%
CheckM Contamination 4.51%
CheckM Strain Heterogeneity 90.2
5S Count 4
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 89
N50 Contigs 135,873 bp
Longest Contig 305,933 bp
Scaffold Count 89
N50 Scaffolds 135,873 bp
Longest Scaffold 305,933 bp
Genome Size 4,850,211 bp
Protein Count 4,642
Coding Density 88.03%
GC Percentage 50.57%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 100175
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02640737
Country Gambia
Date 2015-8-11
Genbank Assembly Accession GCA_001266075.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 13.47 N 16.60 W
Molecule Count N/A
CDS Count 5,057
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter University of Maryland, School of Medicine
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHSR00000000.1