Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 401817
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 97.29%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 3
tRNA Count 20
Contig Count 96
N50 Contigs 142,435 bp
Longest Contig 379,810 bp
Scaffold Count 96
N50 Scaffolds 142,435 bp
Longest Scaffold 379,810 bp
Genome Size 4,899,201 bp
Protein Count 4,794
Coding Density 87.69%
GC Percentage 50.43%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 401817
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02640731
Country Kenya
Date 2015-08-11
Genbank Assembly Accession GCA_001265935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 1.27 S 36.80 E
Molecule Count N/A
CDS Count 5,199
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter University of Maryland, School of Medicine
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHSL00000000.1