Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 401954
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 1.06%
CheckM Strain Heterogeneity 75.0
5S Count 4
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 287
N50 Contigs 55,566 bp
Longest Contig 223,455 bp
Scaffold Count 287
N50 Scaffolds 55,566 bp
Longest Scaffold 223,455 bp
Genome Size 5,315,593 bp
Protein Count 5,359
Coding Density 87.60%
GC Percentage 50.61%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 401954
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02640709
Country Kenya
Date 2015-08-11
Genbank Assembly Accession GCA_001265535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 1.27 S 36.80 E
Molecule Count N/A
CDS Count 5,821
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter University of Maryland, School of Medicine
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 88
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHRP00000000.1