Escherichia flexneri
Isolate MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 401150
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 92.82%
CheckM Contamination 7.72%
CheckM Strain Heterogeneity 88.52
5S Count 6
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 142
N50 Contigs 115,810 bp
Longest Contig 304,682 bp
Scaffold Count 142
N50 Scaffolds 115,810 bp
Longest Scaffold 304,682 bp
Genome Size 5,077,572 bp
Protein Count 4,965
Coding Density 87.74%
GC Percentage 50.42%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 401150
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02640707
Country Kenya
Date 2015-08-11
Genbank Assembly Accession GCA_001265495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 1.27 S 36.80 E
Molecule Count N/A
CDS Count 5,395
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter University of Maryland, School of Medicine
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHRN00000000.1