Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 302662
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 2.0%
CheckM Strain Heterogeneity 54.55
5S Count 6
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 478
N50 Contigs 19,561 bp
Longest Contig 70,628 bp
Scaffold Count 478
N50 Scaffolds 19,561 bp
Longest Scaffold 70,628 bp
Genome Size 5,126,910 bp
Protein Count 5,310
Coding Density 87.85%
GC Percentage 50.43%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 302662
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02640702
Country Mozambique
Date 2015-08-11
Genbank Assembly Accession GCA_001265455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 25.95 S 32.58 E
Molecule Count N/A
CDS Count 5,720
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter University of Maryland, School of Medicine
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 91
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHRI00000000.1