Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 100414
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 3.53%
CheckM Strain Heterogeneity 91.11
5S Count 5
16S Count 3
23S Count 2
tRNA Count 18
Contig Count 116
N50 Contigs 164,156 bp
Longest Contig 334,809 bp
Scaffold Count 116
N50 Scaffolds 164,156 bp
Longest Scaffold 334,809 bp
Genome Size 5,306,846 bp
Protein Count 5,168
Coding Density 87.90%
GC Percentage 50.44%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 100414
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02640691
Country Gambia
Date 2015-08-11
Genbank Assembly Accession GCA_001265155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude 13.47 N 16.60 W
Molecule Count N/A
CDS Count 5,616
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter University of Maryland, School of Medicine
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JHQX00000000.1