Clostridium_H botulinum_B
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium_H; s__Clostridium_H botulinum_B
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium botulinum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium botulinum
NCBI Strain Identifiers 38028-CD
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000204565.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 105
N50 Contigs 48,579 bp
Longest Contig 212,125 bp
Scaffold Count 104
N50 Scaffolds 48,579 bp
Longest Scaffold 212,125 bp
Genome Size 3,118,863 bp
Protein Count 2,985
Coding Density 86.63%
GC Percentage 27.93%
Ambiguous Bases 48
GTDB representative GCA_000204565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM126454v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03876596
Country France: Ille et Vilaine
Date 2015-8-11
Genbank Assembly Accession GCA_001264545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Poultry Farm
Latitude Longitude 48.13 N 1.31 W
Molecule Count N/A
CDS Count 2,910
Refseq Category na
Seq Rel Date 2015/08/11
Spanned Gaps 1
Species Taxid 1491
SSU Count 3
Submitter Anses
Taxid 1491
Total Gap Length 14
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGVO00000000.1